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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lsa003891 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family |
bHLH |
Protein Properties |
Length: 340aa MW: 37936.7 Da PI: 6.9488 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PUT-187a-Lactuca_sativa-24082 | PU_ref | plantGDB | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.5 | 2.4e-13 | 137 | 188 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h +Er+RR+++N+ ++ +r+++P++ ++++ + a+i+ A++++k+L+
Lsa003891 137 QRMTHITVERNRRKQMNEYLAVIRSMMPSS---YAQRGDQASIVAGAINFVKQLE 188
79****************************...********************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MALETIVYSQ GQIGNVGYNY VFQEDHIFGG FLEGTNHTNH HQESASVHEY WGDYSSSSSA 60 MHIKDQWDPK SSPDDCTGGG ECDRYFLGEL FLPDNHRDMR LESSPTATVA TTTATAAGRR 120 KRRRTKSGKN KEDIENQRMT HITVERNRRK QMNEYLAVIR SMMPSSYAQR GDQASIVAGA 180 INFVKQLEHQ VQTLEIKKSA NLHGYSPPLQ PFKEFFTFPQ YSTGRAIYDD GGGGGGGGSA 240 TKTKNRPPAM AEIEVAMVES HANLKILSKK RKTQLLKMVA GLQCLWLSIL HLNVTTVEQM 300 VLYTLSVKLE DGCQLSTVDE IADAVNFLLC RIEEESLCSN
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 119 | 123 | RKRRR |
2 | 119 | 124 | RKRRRT |
3 | 137 | 148 | RMTHITVERNRR |
4 | 263 | 271 | LKILSKKRK |