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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lsa003879 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 214aa MW: 24246.3 Da PI: 5.2293 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Lsa#S18769943 | PU_ref | Unigene | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 72 | 5.1e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie+ks r vtfskRr+g++ KA LS LCd++vavi+fs +gklye+++
Lsa003879 9 KRIEDKSSRLVTFSKRRTGLIEKARQLSGLCDVDVAVIVFSARGKLYEFCN 59
79***********************************************95 PP
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| 2 | K-box | 32.5 | 3.7e-12 | 118 | 171 | 44 | 97 |
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e+Ls+ e+ qLe++L+++l + Rs+K++l++e +++lq++ek+l +e++++ ++
Lsa003879 118 EELSVVEMTQLEEELDTALMQTRSRKTQLMMEYVSTLQQQEKDLIKEKEEIIQQ 171
689*****************************************9999988776 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 27.614 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.06E-25 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.5E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.03E-32 | 2 | 79 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.2E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 8.603 | 86 | 178 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 6.2E-8 | 118 | 170 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MGRRKLEIKR IEDKSSRLVT FSKRRTGLIE KARQLSGLCD VDVAVIVFSA RGKLYEFCNG 60
RTANSVEHIL ARYEAENRSM KVDGQDSELP LKCTKFKTCK ELLQMVDRLV EENNSNNEEL 120
SVVEMTQLEE ELDTALMQTR SRKTQLMMEY VSTLQQQEKD LIKEKEEIIQ QNASAENVFG 180
IGGGGGGXGR NDDLSVNQMD SPQHLTLPLF IPNP
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