PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Lsa003268

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GeBP

Protein Properties

Length: 409aa MW: 46202.2 Da PI: 4.7192

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688985	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-54000	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.3	6.4e-35	111	211	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlw++eDei lLqG++d+++++ + + ++d++afy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke +f+++hdq +fels kiW Lsa003268 111 LFQRLWTDEDEIELLQGFLDYTNQRLVnnpfhHHHHDTTAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRNVLSKISSGKEYVFKSAHDQITFELSCKIW 210 79********************998766655567************************************************************** PP DUF573 97 g 97 Lsa003268 211 S 211 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-32	112	211	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGSQEDDHIA TVYGEDLDED DESEDDDLTL PNQNVDEDDV DLVDDEEEDD SVSSGVGGVT 60 IAVAGVPNAN TTVAATPTAA ITGTVNATPI SRSDGVLEQR KIVPLDESRR LFQRLWTDED 120 EIELLQGFLD YTNQRLVNNP FHHHHHDTTA FYDQIKNKLQ LDFNKNQLVE KLRRLKKKYR 180 NVLSKISSGK EYVFKSAHDQ ITFELSCKIW SSEAALVSTP ATADVARFED EEPNNPNPYP 240 NPNLNLTFNL NEQNGNGVAH PHPHPHPNSS EKKIPRSRKR SRSSGVKIEE KIIQQQPPAP 300 PVVEGVSNYS NPIRNVVEET VRNYLLPLFK ELLDGSQNMG RGNFRGLSSG GMNFDPFSLF 360 GSMNFPFGDI TDEKWRKQHI LELEVCSKRL ELVQDQIKSQ LEELRSMRR

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGSQEDDHIA TVYGEDLDED DESEDDDLTL PNQNVDEDDV DLVDDEEEDD SVSSGVGGVT  60
IAVAGVPNAN TTVAATPTAA ITGTVNATPI SRSDGVLEQR KIVPLDESRR LFQRLWTDED  120
EIELLQGFLD YTNQRLVNNP FHHHHHDTTA FYDQIKNKLQ LDFNKNQLVE KLRRLKKKYR  180
NVLSKISSGK EYVFKSAHDQ ITFELSCKIW SSEAALVSTP ATADVARFED EEPNNPNPYP  240
NPNLNLTFNL NEQNGNGVAH PHPHPHPNSS EKKIPRSRKR SRSSGVKIEE KIIQQQPPAP  300
PVVEGVSNYS NPIRNVVEET VRNYLLPLFK ELLDGSQNMG RGNFRGLSSG GMNFDPFSLF  360
GSMNFPFGDI TDEKWRKQHI LELEVCSKRL ELVQDQIKSQ LEELRSMRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770268.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A2J6KZF9	0.0	A0A2J6KZF9_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400009206	1e-93	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	6e-48	DNA-binding storekeeper protein-related transcriptional regulator