PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003043
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 492aa    MW: 55581.2 Da    PI: 7.2795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690323PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-38237PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12440489147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++rWTt E++ l  +v+++G+g+Wk I +      + Rt+ ++k++w+++
        Lsa003043 440 KKRWTTLEEDTLRTGVQKYGKGNWKVILNIYRdifEDRTEVDLKDKWRNL 489
                      68**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.693435492IPR017930Myb domain
SuperFamilySSF466897.18E-14438491IPR009057Homeodomain-like
SMARTSM007171.9E-8439492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-12440490IPR009057Homeodomain-like
PfamPF002493.5E-10440489IPR001005SANT/Myb domain
CDDcd116602.78E-18441491No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDIDVSGWIL EFLLRQSSLD NGTLNDLIRV LPIPDNNLRL KKSLILRKIE SDIEKGTISD  60
RTIEFLEQIE ELELREGSVE VSAAMKAAYC TVAMYCTTKS IEEGAGDIKE KYTTAVSRIW  120
SGRIREIEIS DVAKIVGLVE ADLLRWMNDI EAGVLDVDVF KNVLARFKGL DVLEVLRRYV  180
NEAKEKMGPS FIELACETIL SDDALSKTMG LNEVSELNNQ IKDNTPTVAP VVSQDMNADP  240
NSKGNEALRT RVPPRDKHGG PRCFRKPGHG GTHRGAKIVD PIETNAYDCL STPEVNKVRE  300
ALKTSSFELH AVVKDPLQKA LRIAESLKAN TTTGENMCNK HVVGNESRVE DVEAPSPSHD  360
RKGKNLEANE NDSVCRDQRD KHKPNLFERN STAHTLEWSD SIDSLTEGSP TRPHLPSPKK  420
RAVSPLSVYK MAKLVKHRRK KRWTTLEEDT LRTGVQKYGK GNWKVILNIY RDIFEDRTEV  480
DLKDKWRNLT RW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418440KKRAVSPLSVYKMAKLVKHRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728829.10.0uncharacterized protein LOC111876523 isoform X1
TrEMBLA0A103XNP90.0A0A103XNP9_CYNCS; Homeodomain-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-16TRF-like 5