PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002867
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 125aa    MW: 14259.5 Da    PI: 11.386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-39865PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.2e-1085111329
                HHHHHHHHHHHHHHHHHHHHHHCTSCC CS
        HLH   3 rahnerErrRRdriNsafeeLrellPk 29 
                r+h+e+ErrRR+riN  ++ Lr+l+P 
  Lsa002867  85 RNHSEVERRRRERINGHLSMLRSLIPG 111
                58************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-878113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.63982125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-785111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-985112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEFPPSIFKG FTSSEEFALK EMMMMRGGCG RKTSSSSLVL DNERGEIVRA LVRPGSIHHH  60
PHHHNSHLHH HQKGAKAEKA LMALRNHSEV ERRRRERING HLSMLRSLIP GTTKFNVLLK  120
ILAKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759443.14e-86uncharacterized protein LOC111907866
TrEMBLA0A2J6LNC59e-85A0A2J6LNC5_LACSA; Uncharacterized protein
STRINGPOPTR_0013s12190.13e-18(Populus trichocarpa)