PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001658
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 418aa    MW: 46589.3 Da    PI: 5.0643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32117455PU_unrefUnigeneView CDS
gnl|UG|Lsa#S58685643PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-7052PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.7e-52331601128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtdeelv +yL++k+ gk++++ e+++e+d+yk+ePw+L   +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + k+e
  Lsa001658  33 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-EAVSEIDVYKSEPWELAdySSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRSVRH-KSE 130
                579*************************99.89**************84347777888**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                ++g+kktLvf++grap+g++t+Wvmheyrl
  Lsa001658 131 TIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 160
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6229183IPR003441NAC domain
PROSITE profilePS5100557.89233183IPR003441NAC domain
PfamPF023653.2E-2835160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSHELMTVAP PAQPAAIPAL SAAAPSSPPP TSLAPGFRFH PTDEELVRYY LRRKACGKPF  60
RFEAVSEIDV YKSEPWELAD YSSLKTRDLE WYFFSPVDRK YGNGSRLNRA TGKGYWKATG  120
KDRSVRHKSE TIGMKKTLVF HSGRAPDGKR TNWVMHEYRL VDQELVRAGV VQDAFVLCRI  180
FQKSGLGPPN GDRYAPFIEE EWDDDDAALF VPGGETEDDL TRGDETLPQG NDIVQEAAVN  240
MIACGSEGMV DHHQSIPFVC KRERSDDSVL NPGPELRNLL SIPQQRTKES DEIEKNNGSN  300
GNGSEDSTTS QDPRIAQLSS SATATALMEF PLLESLEAKV SQPSASQPYS FDAATLEKSV  360
PPGYLKFIKN LEHEILNVSM ERETVKIEVM RAHAMIDILQ SQIDVLTKEN GDLKDKIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-513218316165NO APICAL MERISTEM PROTEIN
1ut4_B1e-513218316165NO APICAL MERISTEM PROTEIN
1ut7_A1e-513218316165NO APICAL MERISTEM PROTEIN
1ut7_B1e-513218316165NO APICAL MERISTEM PROTEIN
3swm_A2e-513218319168NAC domain-containing protein 19
3swm_B2e-513218319168NAC domain-containing protein 19
3swm_C2e-513218319168NAC domain-containing protein 19
3swm_D2e-513218319168NAC domain-containing protein 19
3swp_A2e-513218319168NAC domain-containing protein 19
3swp_B2e-513218319168NAC domain-containing protein 19
3swp_C2e-513218319168NAC domain-containing protein 19
3swp_D2e-513218319168NAC domain-containing protein 19
4dul_A1e-513218316165NAC domain-containing protein 19
4dul_B1e-513218316165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751380.10.0NAC domain containing protein 52-like
TrEMBLA0A2J6M5L40.0A0A2J6M5L4_LACSA; Uncharacterized protein
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-93NAC domain containing protein 50