PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa001625 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 267aa MW: 29418.6 Da PI: 9.4391 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.3e-14 | 96 | 140 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Lsa001625 96 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 140 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.997 | 89 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-17 | 91 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-17 | 92 | 143 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-10 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 95 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-11 | 96 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-9 | 96 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSESHSMNGQ NSGDGGSGEI MLFGVRVKVD PMRKSVSMND LSQYVQIQPA THGSSSNSNN 60 NFDGSTAVAA DTGYASADDA VRNQSNGGRE RKRGVPWTEE EHKLFLLGLQ KVGKGDWRGI 120 SRNFVKTRTP TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TDSVAAIPVE EQKDDEDNKS 180 QQISPLSGFP MAAFSPPSPL PLMENQMKTE AFCNGGQFNQ STRTNEKNSL SLSLNLSLSY 240 DNNRMVDSSA FQVIPPFNNG DRMISVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023730192.1 | 0.0 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 2e-69 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2J6KNI9 | 0.0 | A0A2J6KNI9_LACSA; Uncharacterized protein | ||||
STRING | Solyc06g071230.2.1 | 1e-70 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 1e-55 | MYB_related family protein |
Publications ? help Back to Top | |||
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