PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa001431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 378aa MW: 42678.9 Da PI: 5.3073 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.6e-16 | 103 | 152 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K + a+ L ++++YI+ Lq Lsa001431 103 RSKHSETEQRRRSKINERFQILRDLIPQN----DQKRDRASFLLEVIQYIQFLQ 152 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-18 | 99 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-21 | 99 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.736 | 101 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-13 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.30E-15 | 103 | 156 | No hit | No description |
SMART | SM00353 | 8.4E-12 | 107 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
GLFSDPYSCP PYPISPALSE IKPPNSSAVP TFIAADVAAT PTAAPPLPLR LNTXKELELM 60 VRTVKNHHHQ EEEEDEEDFI SRTTDASSQK DGRRNDQKAS SHRSKHSETE QRRRSKINER 120 FQILRDLIPQ NDQKRDRASF LLEVIQYIQF LQEKLQVYEG TFHGWSPEPT KLMPWRGNSV 180 TDTFTDQSQP IKNGSLHEGN IVFSPPMLSN TQSLIEHELS HSSAARAAAL DIPLQQNTYL 240 PEPDPDPARA ARIPHEYWDD RSLMNEDATP NELQELKMQS EGDRDRDRIS DAYSKGLLNN 300 LTQALGSCGV DLSQANISVQ FDIRKGTSSG STSTSFGIKE HDFLSDGNQG MEHCGIRRRD 360 DDVVYDQVLK KPRTQQNQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023729207.1 | 0.0 | transcription factor BIM2-like | ||||
TrEMBL | A0A2J6KQT3 | 0.0 | A0A2J6KQT3_LACSA; Uncharacterized protein | ||||
STRING | XP_006482443.1 | 4e-84 | (Citrus sinensis) |