PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 378aa    MW: 42678.9 Da    PI: 5.3073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681168PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16103152255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h+e E+rRR++iN++f+ Lr+l+P++    ++K + a+ L ++++YI+ Lq
  Lsa001431 103 RSKHSETEQRRRSKINERFQILRDLIPQN----DQKRDRASFLLEVIQYIQFLQ 152
                899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1899172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-2199171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.736101151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-15103156No hitNo description
SMARTSM003538.4E-12107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
GLFSDPYSCP PYPISPALSE IKPPNSSAVP TFIAADVAAT PTAAPPLPLR LNTXKELELM  60
VRTVKNHHHQ EEEEDEEDFI SRTTDASSQK DGRRNDQKAS SHRSKHSETE QRRRSKINER  120
FQILRDLIPQ NDQKRDRASF LLEVIQYIQF LQEKLQVYEG TFHGWSPEPT KLMPWRGNSV  180
TDTFTDQSQP IKNGSLHEGN IVFSPPMLSN TQSLIEHELS HSSAARAAAL DIPLQQNTYL  240
PEPDPDPARA ARIPHEYWDD RSLMNEDATP NELQELKMQS EGDRDRDRIS DAYSKGLLNN  300
LTQALGSCGV DLSQANISVQ FDIRKGTSSG STSTSFGIKE HDFLSDGNQG MEHCGIRRRD  360
DDVVYDQVLK KPRTQQNQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023729207.10.0transcription factor BIM2-like
TrEMBLA0A2J6KQT30.0A0A2J6KQT3_LACSA; Uncharacterized protein
STRINGXP_006482443.14e-84(Citrus sinensis)