PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001183
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 333aa    MW: 37708.3 Da    PI: 8.4867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681138PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07181203123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ Cgk F+r  nL+ H+r H
  Lsa001183 181 HYCQVCGKGFKRDANLRMHMRAH 203
                68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-6179206No hitNo description
Gene3DG3DSA:3.30.160.606.1E-7181232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM0035548229262IPR015880Zinc finger, C2H2-like
SMARTSM0035534267289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
XQMAAHPNYC FSNTFEDVLA SSLQSPTNDS IVFNLSILRD KAQQVQTIAD MFFTQTQTQS  60
MTSSNSSTSV NMENLAGLLQ EIIVIASNVM FACQNIGSTP VTNQIDNTHE FDHQFDQPND  120
VFKWSGGGLE KSFGIVNFNT RNEDNLLEKR KELQVQRDRH SGTGYDIIEM DAADLLAKYT  180
HYCQVCGKGF KRDANLRMHM RAHGDEYKST AALSNPLNGG TTVKPARKYS CPQEGCRWNR  240
KHEKFQPLKS MVCMKNHYKR SHCPKMYSCK RCQQKQFSVL SDLRTHEKHC GDVKWRCSCG  300
TTFSRKDKLM GHVGLFIGHT PADVDTSSSN KIQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749482.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-106STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2J6JG950.0A0A2J6JG95_LACSA; Uncharacterized protein
STRINGXP_009799889.11e-116(Nicotiana sylvestris)
STRINGMigut.N02542.1.p1e-117(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein