PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 239aa    MW: 27043.7 Da    PI: 10.3672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675412PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.0003187135254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +  + erE+  Rd +N+ f eL + l +     ++ + K++ L+ +++ +++L
  Lsa000661  87 KIHKAEREKLKRDYMNDLFLELTKALEPT----NQNNGKSSALTDTIRILRDL 135
                667889********************997....67777888888888777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1084151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.40785135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-685143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.10004.6E-4144176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
XHRRIPATRL RVPSSINNTP FIFKHTIQLF YSILSTAHLQ FAEVITSTLR LNLSRSAPMD  60
ENVDTTKKKS IGRSSLSKKN GAKVHRKIHK AEREKLKRDY MNDLFLELTK ALEPTNQNNG  120
KSSALTDTIR ILRDLIAQVE SLKKENSVLL AESQYVAIEK NELKEENVAM EAQIKRLQSQ  180
IDQAAGQVVG PVFVVPIQND PKLYTEPKIG SNVSKPHARY PLPSDSWPFN ILSEQGRTD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758363.11e-130transcription factor bHLH47-like
RefseqXP_023758364.11e-130transcription factor bHLH47-like
TrEMBLA0A2J6LQI21e-129A0A2J6LQI2_LACSA; Uncharacterized protein
STRINGXP_010258393.14e-57(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.38e-34bHLH family protein