PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa000621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | NF-YC | ||||||||
Protein Properties | Length: 134aa MW: 15061.3 Da PI: 10.3938 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.3 | 1.5e-17 | 7 | 93 | 12 | 97 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 +t+ + ++P r+k+i+k d+d+++i a+a l+s+a elf+ l+ +s a e+kr+t+k + av+r + + dfl+d p Lsa000621 7 IHTETVQSSIPTGRVKRIMKLDKDINKINADALFLISNATELFVKFLAEKSSEVAVEKKRKTIKLEHLRIAVKRHQpTADFLLDSLP 93 567778999***************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.14E-19 | 11 | 98 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-21 | 15 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-21 | 17 | 93 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAEGEEIHTE TVQSSIPTGR VKRIMKLDKD INKINADALF LISNATELFV KFLAEKSSEV 60 AVEKKRKTIK LEHLRIAVKR HQPTADFLLD SLPLPPPPAA AQTSSKPDRP HKRSDNNPVP 120 VGTRRIDSFF QKEP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023736950.1 | 6e-93 | putative transcription factor C16C4.22 | ||||
TrEMBL | A0A2J6K8J3 | 1e-91 | A0A2J6K8J3_LACSA; Uncharacterized protein | ||||
STRING | Solyc05g015330.1.1 | 2e-48 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 3e-34 | nuclear factor Y, subunit C13 |