PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Publication

Basic Information? help Back to Top

TF ID

Lsa000537

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LBD

Protein Properties

Length: 150aa MW: 16469.6 Da PI: 8.3713

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58676064	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-28084	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.2	5.8e-43	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv++pyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ Lsa000537 10 PCAACKFLRRKCIQGCVFSPYFPPEDPTKFANVHKIFGASNVSKLLNEIAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELDATNA 108 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.965	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-42	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MASSTHPCAP CAACKFLRRK CIQGCVFSPY FPPEDPTKFA NVHKIFGASN VSKLLNEIAP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL IRFSSHQNIL 120 TPSSQSSGSS VQNAHVLPPN YGSYSWNYNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-63	9	114	10	115	LOB family transfactor Ramosa2.1
5ly0_B	4e-63	9	114	10	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023765888.1	1e-109	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	1e-65	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2J6L9D6	1e-108	A0A2J6L9D6_LACSA; Uncharacterized protein
STRING	XP_004142848.1	2e-69	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-67	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]