PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa000147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 616aa MW: 70244.9 Da PI: 5.2751 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 2e-12 | 347 | 390 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++Er+RR+++N+++ +Lr+l+Pk +Kl+ a+iL+ A+eY+ +L Lsa000147 347 LMAERKRRKKLNDRLYTLRSLVPKI-----TKLDRASILKDAIEYVMEL 390 589*********************7.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-21 | 9 | 156 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 7.14E-14 | 339 | 394 | No hit | No description |
PROSITE profile | PS50888 | 16.132 | 341 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 344 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-10 | 347 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-16 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-16 | 348 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MEVLQEVMER LRSIVGPESW DYCVLWKPSK DQRLIEWADC CCSGSNGSHG NGGEDEQRVL 60 FQCKDVTFNH STKDACHLLS LLPSSMPYDH SGIYGQTMIS NQPRWLNFSN SSNTDFSEDN 120 LGTKALIPVP IGLVELFVSK QIPEDQSIID FVTTLFNMSL EQHPILNTNN NVDSSFSVNI 180 DNLDNEESKD YIAQVLDDQK DPNNHFQPPI SPATMLENLN LSPHNISDNH LHPMNFLQQF 240 NYSEKPNGKN MFLEGTSEPM MMNHDDPFDP NSEENVGFDH EIDMALQGQM MGENMNKGHL 300 MEPLENGAKK QGDMNRSDSV SDCSDQNDEE DDPKCRRRNG KPQSKNLMAE RKRRKKLNDR 360 LYTLRSLVPK ITKLDRASIL KDAIEYVMEL KRQVEELQNE LEENSDDEGT TNNQSTIVEQ 420 EVMHGNGSNL KRRFSHGHGM FVNGPQLEAY SGVGAIDVPK HTPDTEGANE KGQQMEPQVE 480 VASLDGNEFY VKVFCEHKPG EFVRLMEAFN SLGLEVTNVN VTSFRCLVLN VFKVERKDSE 540 MVQADHVRES LLEITRNPSR GWPETTTKAP ENGHGMADHQ LHHHHHNHNH HHNHHSHPHN 600 HQKPQYHYNA IYQVLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 335 | 355 | RRRNGKPQSKNLMAERKRRKK |
2 | 349 | 356 | ERKRRKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023751248.1 | 0.0 | transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A2J6M5M8 | 0.0 | A0A2J6M5M8_LACSA; Uncharacterized protein | ||||
STRING | EOX97629 | 1e-177 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-118 | bHLH family protein |