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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj6g3v2274940.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
TCP |
| Protein Properties |
Length: 491aa MW: 51791.6 Da PI: 7.0968 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj6g3v2274940.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 134.3 | 1.1e-41 | 122 | 247 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88
+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++
Lj6g3v2274940.1 122 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaph 215
5699****************************************************************99988888888888555555556666 PP
TCP 89 ...........kaaksaakskksqksaasalnlakesr 115
+ + +++ ++++ +l ++++ +
Lj6g3v2274940.1 216 tfhgaalglahQ------SYEEAFQQHTPMLGFHHHRQ 247
666654433220......33333333333355555444 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MELSDLQNNN NNNNRGTSTT HHPHHHQQEP SPSPPSSVFD GRQSAPFIMG SMSIQAGLTT 60
TSSSSSSSNS SSSSSPSASV SAPAPSQLID ASLAIATRSD PPTHQLTIAA PTPAPVTTVA 120
NPPKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA 180
ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHTFHGA ALGLAHQSYE EAFQQHTPML 240
GFHHHRQQLM SADQISEALP GDSSENYMRK RYREDLFKDD ANNQSSQQNE TGDGPSSPKQ 300
FKPDGGGGGS SSSASGLLRP SNLLPSAAMW AVAPAPAATV GGSTIWMLPV TAGGAVNSAS 360
DNQHTMWPFP PPPQAGGNAN NPAQLHFMQR FNLPTGGVGV EFQGGRSSGL QLGSMYQPPS 420
QHLGLAMSDS NLGMLAALNA YSNNNNNNRG FNVNSDHQTQ NHHHHSLEHQ HQAQPQPTTD 480
SGGEDGPNSS Q
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010521 | 0.0 | AP010521.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT39N07, TM1498, complete sequence. |
