PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2219920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 185aa    MW: 21593.1 Da    PI: 4.7333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2219920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.93.4e-3581231128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeelvv++L++k+e  +++  +vi+++++y+++Pw+L+ ++ ae ++wy++s+r         +nr+t++gyWk tg +++v+s
  Lj6g3v2219920.1   8 LPPGFRFYPTDEELVVHFLHRKAELLPCHP-DVIPDLELYSYDPWELDGRALAEGNQWYYYSRRT--------QNRVTENGYWKPTGIEEPVIS 92 
                      79*************************999.99**************977778899******984........58*****************99 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ vg+kk ++f+ g+a    kt+W+m+eyrl
  Lj6g3v2219920.1  93 StSNKRVGMKKYFMFHLGEA----KTNWIMQEYRL 123
                      867778**********7665....78*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-455153IPR003441NAC domain
PROSITE profilePS5100541.9768155IPR003441NAC domain
PfamPF023655.4E-239123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ELLPCHPDVI PDLELYSYDP WELDGRALAE  60
GNQWYYYSRR TQNRVTENGY WKPTGIEEPV ISSTSNKRVG MKKYFMFHLG EAKTNWIMQE  120
YRLSDSASSS SRSSKRKSQQ KTDFNKWVIC RVYECKEDGD DGTELSCLDE VFLSLDDLEE  180
ISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-37415413164NO APICAL MERISTEM PROTEIN
1ut4_B3e-37415413164NO APICAL MERISTEM PROTEIN
1ut7_A3e-37415413164NO APICAL MERISTEM PROTEIN
1ut7_B3e-37415413164NO APICAL MERISTEM PROTEIN
3swm_A3e-37415416167NAC domain-containing protein 19
3swm_B3e-37415416167NAC domain-containing protein 19
3swm_C3e-37415416167NAC domain-containing protein 19
3swm_D3e-37415416167NAC domain-containing protein 19
3swp_A3e-37415416167NAC domain-containing protein 19
3swp_B3e-37415416167NAC domain-containing protein 19
3swp_C3e-37415416167NAC domain-containing protein 19
3swp_D3e-37415416167NAC domain-containing protein 19
4dul_A3e-37415413164NAC domain-containing protein 19
4dul_B3e-37415413164NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2219920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619181e-103EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339314.11e-109NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK64e-87NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A445JGF81e-107A0A445JGF8_GLYSO; NAC domain-containing protein 104
TrEMBLI1KUF31e-107I1KUF3_SOYBN; Uncharacterized protein
STRINGGLYMA08G19300.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-86xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]