PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2078010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 477aa    MW: 52763.7 Da    PI: 10.3845
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2078010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07841236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     g+W t+E+++l  av ++G+ +Wk +a ++   Rt
  Lj6g3v2078010.1  8 GKWGTWEELILGAAVLRHGTQDWKVVAGELR-VRT 41
                     89**************************998.677 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.191260IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.4E-4743IPR009057Homeodomain-like
PfamPF002492.1E-5842IPR001005SANT/Myb domain
SMARTSM002971.9E-21266370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.8E-18272370IPR001487Bromodomain
CDDcd043695.28E-10272365No hitNo description
SuperFamilySSF473702.35E-19273368IPR001487Bromodomain
PfamPF004392.3E-13275354IPR001487Bromodomain
PROSITE profilePS5001411.478281351IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGTEEGNGKW GTWEELILGA AVLRHGTQDW KVVAGELRVR TPCPDAFTPE NCEAKYEEFL  60
KRYSGSTAWY EELKKARIAE LKRALEQSDK KIGALESKLE SLKAEKNEKI DDRHVENGSG  120
SPASHEPSQK LERVESSNKE LSKDGLSAGS FTHETRTTNW SPERQVPAED TETKPEASHS  180
SEQVKVLNVD NLTHTIYEGQ VGSLTTRRGK RKRKDCGRNI KEAASMGESD LLDSADVVSL  240
CKESSTSNYD EVAKSSGVDD QIKNLKKTGA GEIMEMLDSI FETQGASAFR RRLDSQKRGK  300
YKKMIRRHMD FDTIRSRISD KTIKSARELF RDLLLLANNA LVFYSKSTRV YKSAMLLRDL  360
VTKKMRETSK GISSSKVTTT SEANESSKLP VQNPRVKPRS VRPGNRKIVA KATGGNNSAS  420
GVSDGAKKPC KVDSPSPVES LTVKKKAFGR PKKVGRGTAG PKPATPLKGK KRVRTKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2078010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221280.10.0uncharacterized protein LOC109803972
TrEMBLA0A151T7J00.0A0A151T7J0_CAJCA; Uncharacterized protein
STRINGGLYMA13G31800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-37DNA-binding bromodomain-containing protein