PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2043280.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 586aa    MW: 65387.2 Da    PI: 7.6793
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2043280.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.5e-08188208425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      ++C+ffa+ G+C +G++C+F H
  Lj6g3v2043280.1 188 RICDFFAK-GWCIRGSSCTFLH 208
                      79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.624184211IPR000571Zinc finger, CCCH-type
SMARTSM003560.002185210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6186208IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6188208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4188208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGKEKNLGSV SSAAENLEVM APSTNHHMGE NNAMLKASVP SYETPTLKKG EFHPNLEISS  60
QSKSRENLIS AEHGNSQGLD IDVKNAGSLI QGKTLRVCGE PGSNSKAYLY GVEDIDSRTI  120
KSSCDAEKDD VIGLPPSHCF VEDADGDQNS KNKVLQSEME SRIDVKQMTS RRTISLSPRA  180
EIKDGNKRIC DFFAKGWCIR GSSCTFLHIK EVVNNTDREA EVDFVDAHQM KGLSLEEGVK  240
DNVHTSRMNE EEASLSWHRS HENQKFLPRD NLFPENRFAF NASNKYISPN LSSYSSRAEP  300
FVGSSRVSSH SSGYKSKIRS YDWEPSVPFQ PSFFITSMNA SIPRDLYGPV RDRIEILNIG  360
DGSLKATILT EGPASSQVRT YAAVVGKHMS DLNEDKSSVS SHNRFYENEP NKSCVPREKD  420
CLATETEITS GTYENYQNGK IGMGQHTFGV KDVMKPEKGR AEIDTRHHGE GSSHKKRRVE  480
MDKKIHEMDV DFQANGSMQK ETRELRNFRA ALVDLVKELL KPSWHEGRLS KDSHNLIVKK  540
SVDKVISTLE PHQIPTSVDT AKHYVTSCRG KIAKLVTGYV TKYGKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.66699e-67pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2043280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096680.0AP009668.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT04E21, TM0336, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485809.10.0pinin isoform X2
TrEMBLA0A1S2XCG20.0A0A1S2XCG2_CICAR; pinin isoform X2
STRINGXP_004485808.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-31C3H family protein