PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2019730.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 180aa    MW: 20446.5 Da    PI: 9.4076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2019730.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67e-11960255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     r+  + +Er+RR+++++ + +L +l+ ++   +sk   s  + Le+A++YIk Lq
  Lj6g3v2019730.1  9 RVDRKVIERNRRNQMRTLYRKLNSLVLHQ---TSKEaISLPDQLEEATNYIKRLQ 60
                     677889**********************8...66666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-10574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-5564No hitNo description
PROSITE profilePS5088810.677759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-9973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDNNPSSSRV DRKVIERNRR NQMRTLYRKL NSLVLHQTSK EAISLPDQLE EATNYIKRLQ  60
VNLEKMKEKK NTLLGIERPN VMSLKEGPSM GLKSPKIEIQ QMGSALDVVL ITGSDCQFMF  120
NETIRVLHEE GVDVVNASYK VIEGSAFHSI HCLVTGSANV AERISERLNK FIYGSSYITF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2019730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1473280.0BT147328.1 Lotus japonicus clone JCVI-FLLj-8J7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547148.19e-98transcription factor bHLH162
RefseqXP_028202415.19e-98transcription factor bHLH162-like
TrEMBLI3T3N01e-129I3T3N0_LOTJA; Uncharacterized protein
STRINGGLYMA15G08140.23e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-42bHLH family protein