PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2017500.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 317aa    MW: 32964.6 Da    PI: 9.3308
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2017500.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-383190261
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GGalrnvPvGgg+rk k++
  Lj6g3v2017500.1 31 ARQPQKCPRCDSMNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGALRNVPVGGGSRKAKRA 90
                     57889***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.4E-333389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7893589IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-233689IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEQGQGDGRR GERRVLQQGE ALAQAQAQAQ ARQPQKCPRC DSMNTKFCYY NNYSLTQPRY  60
FCKTCRRYWT QGGALRNVPV GGGSRKAKRA RNSSTAGAVA GNASRPRPLP QQPPQEVVVQ  120
TQQPVVAKEP SAAVAPVVAP FYQGGVGGGG GGYLAALNPS LPFDQSVNVG GDAVHSYVGL  180
LSGFDVAAPP LGFQSQSYFH PSLFYPPVTG GSGVAASTLF NSQQGLVQST MANVTSASHH  240
GWSHQPQNLS FMNNAGSRAS SDAAMWSTFT PNVGAGNSSV AGGGGAGIGG GSFSVVPDEW  300
PDVVPGYDAP PPPPPLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2017500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060760.0AP006076.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19M07, TM0114, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594581.14e-74dof zinc finger protein PBF
RefseqXP_028188675.14e-74dof zinc finger protein PBF-like
TrEMBLA0A445I9389e-73A0A445I938_GLYSO; Dof zinc finger protein DOF5.3
TrEMBLI1M2219e-73I1M221_SOYBN; Uncharacterized protein
STRINGGLYMA13G31110.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-31TARGET OF MONOPTEROS 6