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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1983320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21647.4 Da PI: 5.8891 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110 | 2.6e-34 | 12 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrF+Ptd+elv++yLk+k++g++ + + i+ ++++kvePwd+p +k++e ewyfFs+ ++ nra ++g+Wk g+d++ Lj6g3v1983320.1 12 LPVGFRFKPTDQELVDHYLKHKLQGDDSDSLVAkIPVLNLCKVEPWDIPaFsVIKSNEPEWYFFSPLQS--------NRANRHGFWKYVGSDRN 97 79*************************7776656***************5347777888*******855........566668*********** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++ ++g++ktLvf + g +tdWv+hey++ Lj6g3v1983320.1 98 IKTTrTNIVIGTRKTLVFCR----GGGETDWVIHEYHA 131 *998566679*********4....46689*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-39 | 8 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.177 | 12 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 13 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGGGTFQMLD LLPVGFRFKP TDQELVDHYL KHKLQGDDSD SLVAKIPVLN LCKVEPWDIP 60 AFSVIKSNEP EWYFFSPLQS NRANRHGFWK YVGSDRNIKT TRTNIVIGTR KTLVFCRGGG 120 ETDWVIHEYH AAATFDQAQR TFVLCHLMEG PTKKAALIRE EREFRRLESL DMASDHESED 180 VESEGNTID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-21 | 12 | 130 | 15 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1983320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009770 | 3e-94 | AP009770.1 Lotus japonicus genomic DNA, clone: LjT15D16, TM1935, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027334668.1 | 1e-54 | NAC domain-containing protein 105-like | ||||
TrEMBL | A0A0R0FWD1 | 4e-51 | A0A0R0FWD1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G01911.1 | 2e-50 | (Glycine max) | ||||
STRING | XP_007135341.1 | 3e-50 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-42 | NAC transcription factor-like 9 |