PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1950730.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 900aa    MW: 100272 Da    PI: 6.5745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1950730.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Lj6g3v1950730.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 216
                      99*****************************8544444..48************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Lj6g3v1950730.1 217 EKNQLLLGIRRA 228
                      99999****997 PP
2Auxin_resp118.94e-39253336183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Lj6g3v1950730.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLVKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-22126227No hitNo description
PfamPF023623.5E-23127228IPR003340B3 DNA binding domain
SMARTSM010191.8E-25127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14127229IPR003340B3 DNA binding domain
PfamPF065074.7E-34253336IPR010525Auxin response factor
PfamPF023096.6E-7757852IPR033389AUX/IAA domain
SuperFamilySSF542774.71E-5763842No hitNo description
PROSITE profilePS5174521.572767851IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPALGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL VKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DEFGLNSPLL WLRDSDRGMQ SLNFQGMGVN  420
PWMQPRFDPS MLNMQTDMYQ AVAAAALQDM RSVDPSKQHP SSLLQFQQPQ NFPNRTALMQ  480
AQMLQQSQPQ QVFQNNQENQ QLLQSQSHLQ QHLQHQHSFN GQTQNHNHNQ QQQQQQQQQT  540
QQQVVDNQQI CNAGSTMSQF VSAPQPQSSP TQAQSSLSQQ QSFSDSNVNP VTTIVSPLHS  600
LMGSFPQDET SHLLNLSRTS SWVPVQNSTG WPSKRIAVDP LLSSGASVLP QVEQLGQPQN  660
TISQNVVTLP PFPGRECSID QGSNDPQNHL LFGVNIEPSS LLMHNGISNL KGISSNSDSP  720
TLPYQSSNYL NTTGPDSSLN HGITQSIDES GFLQSPENAG QGNPQNKTFV KVYKSGSFGR  780
SLDITKFSSY PELRGELARM FGLEGELEDP VRSGWQLVFV DRESDVLLLG DGPWPEFVNS  840
VWCIKILSPQ EMQQMGNTGL ELLNSVPNQR LSNGVCDDYM SRQDPRNLGS GITTVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611335743388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1950730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363939.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445GRA20.0A0A445GRA2_GLYSO; Auxin response factor
TrEMBLK7MAG30.0K7MAG3_SOYBN; Auxin response factor
STRINGGLYMA15G09750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]