PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1880170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YC | ||||||||
Protein Properties | Length: 235aa MW: 26666.6 Da PI: 7.7519 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 143.4 | 5.2e-45 | 39 | 139 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 + +fw++q ie+++df nh+lPlarikki+kad++vkmi+aeaP+llskace+fi elt r+w++aeenkrrtl ksd a+a++rtd++dfl Lj6g3v1880170.1 39 IDNFWKTQsqeIENTNDF-NHALPLARIKKIMKADDEVKMIAAEAPILLSKACEMFIKELTTRAWVNAEENKRRTLLKSDFASAISRTDVYDFL 131 568**9997778888888.89************************************************************************* PP NF-YC 93 vdivprde 100 vdivpr+e Lj6g3v1880170.1 132 VDIVPRNE 139 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.19E-28 | 24 | 131 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.6E-34 | 60 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-19 | 60 | 122 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MTTNTQIAGG SSSSCYPRGQ LYPHQQIHQL QQQHLERRID NFWKTQSQEI ENTNDFNHAL 60 PLARIKKIMK ADDEVKMIAA EAPILLSKAC EMFIKELTTR AWVNAEENKR RTLLKSDFAS 120 AISRTDVYDF LVDIVPRNET MEHDVYAGIG MPPMRGNVAN VVQNVPPPLG PPHPYYYMPS 180 PASQHFGAAI PPRMVMARPP FAHPIYMQQP PYPYGLQVMH PAPQNLMMKN SPDSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-42 | 45 | 137 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1880170.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004960 | 0.0 | AP004960.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19B18, TM0139, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846875.1 | 2e-57 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_018846876.1 | 2e-57 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8LCG7 | 3e-50 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q9SMP0 | 3e-50 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2I4GSK3 | 4e-56 | A0A2I4GSK3_JUGRE; nuclear transcription factor Y subunit C-9-like | ||||
STRING | XP_008351229.1 | 2e-54 | (Malus domestica) | ||||
STRING | XP_008390839.1 | 2e-54 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-50 | nuclear factor Y, subunit C1 |