PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1742780.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 557aa    MW: 62290.2 Da    PI: 7.0388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1742780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-12109151447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      W ++++ ll+++++++G+g+W+ +a+++g ++   +c++++q++
  Lj6g3v1742780.1 109 WNADDEILLLEGIEMYGMGNWTEVAEHVG-TKNKQSCIEHYQNV 151
                      *****************************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250245.1E-14936556IPR016827Transcriptional adaptor 2
SMARTSM002912.8E-114590IPR000433Zinc finger, ZZ-type
PfamPF005692.2E-94789IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.8694992IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.0E-1449111No hitNo description
CDDcd023358.91E-274997No hitNo description
PROSITE patternPS0135705178IPR000433Zinc finger, ZZ-type
SuperFamilySSF466893.04E-12102155IPR009057Homeodomain-like
PROSITE profilePS5129320.001104156IPR017884SANT domain
SMARTSM007171.0E-10105154IPR001005SANT/Myb domain
PfamPF002492.2E-11108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-7109151IPR009057Homeodomain-like
CDDcd001674.73E-11109151No hitNo description
SuperFamilySSF466895.02E-19469554IPR009057Homeodomain-like
PROSITE profilePS5093411.957471557IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MGRSRGNFQH ADEDPNQRSR RKKNAASGEN LESGAAGQGV SEGGKKALYH CNYCNKDISG  60
KIRIKCAMCP DFDLCIECFS VGAEVTPHKS NHPYRVMDNL SFPLICPDWN ADDEILLLEG  120
IEMYGMGNWT EVAEHVGTKN KQSCIEHYQN VYLNSPFFPL PDMSHVVGKN RKELLAMAKG  180
HGEDKKGISM GDLSVKEESP FSPSRVKVED SHKAGSANRL PSSLNSELDS VPSGSAHAAA  240
GANQKASNMA RGKGGPGIIK MEDSQGDRDF GGKKPNSSGN EGPSLVEASG FNAKRQEFDP  300
EYDNDAEQLL AEMEFKDNDT EEEREIKLRV LRLYSKRLDE RKRRKDFILE RNLLYPNPFE  360
KDLTPEEKAI CRRYDLFMRF HSKEDHLELL RTAISEHRTF RRLQELKEAR AAGCRTSAEA  420
ERYLVQKRKR VAEENALRTK ESALQVGPSS QAVPNALMSP DSTGKDISVR PATSSSVHEI  480
DVTGFYGADL LSEPEKRLCC ELRLPPAVYL KMQEQLSVQM IAGNVSTKSD AHQLFKMDTF  540
KIDRVYDMLI KKGFGSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C8e-40491645120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1742780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-67AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362423.10.0transcriptional adapter ADA2b isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A445GSF00.0A0A445GSF0_GLYSO; Transcriptional adapter
STRINGGLYMA15G12400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]