PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v1694980.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 264aa MW: 28967.7 Da PI: 6.9532

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v1694980.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9.3e-34	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Lj6g3v1694980.3 36 KPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-32	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.341	33	93	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.4E-24	36	91	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.5E-17	36	92	IPR009057	Homeodomain-like
Pfam	PF00249	8.9E-8	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-15	131	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MYPRLIHPHE GMIGHDGGGV PNHKGDPCLV LTADPKPRLR WTQDLHERFV DAVTQLGGPS 60 KATPKAIMRT MNVKGLTLFH LKSHLQKYRL GKQSGKDFSE GCKDGSYLLE SPGSDNPSPK 120 LPTSDTNEGY EIKEALRAQM EVQSKLHLQV EAEKHLQIRQ EAERRYMAMV ERACKMLADQ 180 FISATVTGTD NQKFQGIGSK APRGSLVDHP GFYSLPSTEA AGVSVPEEER PHNLPSQRAD 240 CSTESCLTSH ESSGGLVLEG SPSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.7062	0.0	cell culture\| pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v1694980.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT145529	0.0	BT145529.1 Lotus japonicus clone JCVI-FLLj-1B1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486389.1	1e-171	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_004486390.1	1e-171	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	1e-66	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	I3SYI1	1e-179	I3SYI1_LOTJA; Uncharacterized protein
STRING	XP_004486388.1	1e-171	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-69	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]