PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1618130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 300aa    MW: 33256 Da    PI: 9.9649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1618130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
  Lj6g3v1618130.1  5 KQKWTAEEEAALKAGVVKHGVGKWRTILKDPEynsvlYLRSNVDLKDKWRNL 56
                     79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.796158IPR017930Myb domain
SuperFamilySSF466892.48E-16271IPR009057Homeodomain-like
SMARTSM007175.0E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-13556IPR009057Homeodomain-like
PfamPF002498.4E-8556IPR001005SANT/Myb domain
CDDcd116602.80E-18656No hitNo description
SuperFamilySSF467858.16E-17117196IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.8E-12117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.3E-15118188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.622119187IPR005818Linker histone H1/H5, domain H15
PfamPF005382.7E-8124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGVGKWRT ILKDPEYNSV LYLRSNVDLK DKWRNLSVMA  60
NGWTSREKSR LSVRRVHQNA KQDDNSMAVT VVPSDEEIVD VKPLQVSRDM VQVPGPKKSI  120
VRLDNLILEA ITSLNEPGGS NKTNIAAYIE DQYWAPSDFK MLLSAKLKFL TASGKLIKVK  180
RRYRIAPTTP AYPERRRNSS MSLLTGRQKA SVNLEKDEAN IQTKSQIDVE IARLRSMTPQ  240
EAAAVAARAV EEAEAAIAEA EEAAREAEAA EAEAEAAEAF AQAAMKTMKE RNTPKKIIPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.90200.0cell culture| floral bud| pod| root
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1618130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331376.11e-145telomere repeat-binding factor 1 isoform X1
RefseqXP_027331385.11e-145telomere repeat-binding factor 1 isoform X2
RefseqXP_027331394.11e-145telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK41e-99TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1S2XAV21e-136A0A1S2XAV2_CICAR; telomere repeat-binding factor 1
TrEMBLA0A4P1RMA11e-136A0A4P1RMA1_LUPAN; Uncharacterized protein
STRINGXP_004486503.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-100telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]