PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1270770.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 315aa    MW: 34854 Da    PI: 8.9662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1270770.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.6e-19191224134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+ C+ttkTplWR gp+g+ktLCnaCG+++rk +
  Lj6g3v1270770.1 191 CADCNTTKTPLWRGGPRGPKTLCNACGIRQRKAR 224
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-17185236IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13187224No hitNo description
PROSITE profilePS5011412.36189221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-15189224IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.41E-12190218No hitNo description
PfamPF003202.8E-16191224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTPTYQYEVS SMPFDLNYED HSHQLFNTNH DQASSSLSCS TLYNPDQDQE ARSYYMEPQP  60
LQSDHQEAEK AVPSSGSWDH PAVEKDENYR SDLKLSTVRK KLENGNENLQ GDHHQEDSSA  120
KWMPLKIRMK RRLMVSDQTS SDHAIAGIQS TDEHKQENQK LPLPQHLRST DNSSCNIPSN  180
NNSNIPAVRV CADCNTTKTP LWRGGPRGPK TLCNACGIRQ RKARRALAAA STAAANGAPL  240
MAAADQKPHV KRNHKLQIKG KKSKTELKKK PNLGGGGTKK LGSEELTISL SKSLALPQDE  300
KDAAILLMAL SHGLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1270770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368560.0BT136856.1 Lotus japonicus clone JCVI-FLLj-6D5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546455.15e-83putative GATA transcription factor 22
TrEMBLI3S8Q91e-136I3S8Q9_LOTJA; Uncharacterized protein
STRINGGLYMA15G18380.12e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-16cytokinin-responsive gata factor 1