PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1078590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ARR-B | ||||||||
Protein Properties | Length: 674aa MW: 73328 Da PI: 6.9142 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.8 | 5.8e-29 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+il++m+v+gLt+e+v+SHLQkYRl Lj6g3v1078590.1 211 KPRVVWSVELHKKFVAAVNQL-GLDKAVPKKILDMMNVEGLTRENVASHLQKYRL 264 79*******************.********************************8 PP | |||||||
2 | Response_reg | 85.7 | 1.3e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ +++l+++l+k +y +v+ + ++ eal++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + ++ Lj6g3v1078590.1 26 VLAVDDDPTCLRVLENLLRKCQY-HVTITNQAVEALKMLRENRnkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGVRH 117 799********************.***************999889*******************87754.558********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel + Lj6g3v1078590.1 118 GAVDYLLKPVRIEELKN 134 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.5E-43 | 23 | 157 | No hit | No description |
SuperFamily | SSF52172 | 3.98E-37 | 23 | 145 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.5E-35 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.632 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.1E-26 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.41E-30 | 27 | 139 | No hit | No description |
PROSITE profile | PS51294 | 11.409 | 208 | 267 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-30 | 208 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-20 | 209 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 211 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-8 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MAVENQRGHL VDEDAGRDRF PVGMRVLAVD DDPTCLRVLE NLLRKCQYHV TITNQAVEAL 60 KMLRENRNKF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGVRHGAV 120 DYLLKPVRIE ELKNIWQHVV RRKTSDGKDQ NKASNEERGP NVSGGGSQGI ISENSADQNR 180 KLGKKRKDQN EEEDEDGDGN GEDDDPSSQK KPRVVWSVEL HKKFVAAVNQ LGLDKAVPKK 240 ILDMMNVEGL TRENVASHLQ KYRLYLKKAT QQVNMVAAFG GGDAYLRMGA IDGFGDFCTS 300 SASGRISSAT LPSYASNGIF GRLNSPASLS LRGISSPSLI RPVPSQNINN SLNTLATIQP 360 SIFPANQSPS LLQGIPTSIE LNQSKQNGCP TGISQLSQVD SSRFAVAASG FSDSRATVSN 420 SNSSLPGVSN NHLMLHGNPH QTHNAGAFRN QSSVRAPSLS TDSFDIGIGG SSNLLDYNRC 480 NENWQNASQL SKFPANSLPL CEAFNNDQLP PTSINVSNSS THIDNSQVGF SSGIAIAAPM 540 GDARNDLRCQ EGLIGNVIQP SSYTARERWE DYNQNTSRPF NPVNSQVSPH GVTGSLRNSL 600 SQNKAMCSNS ASLAGHLNGA STSIARCTEV ENFSSDMRLK SNEAYMLEQM KSHDGFMQNF 660 GTLDDIMGAM VKRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-25 | 207 | 270 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.3408 | 0.0 | floral bud| pod |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1078590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010301 | 0.0 | AP010301.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT46O03, TM1904, complete sequence. | |||
GenBank | AP010302 | 0.0 | AP010302.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT40N16, TM2033, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533888.2 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Refseq | XP_020222712.1 | 0.0 | two-component response regulator ORR24 isoform X2 | ||||
Refseq | XP_028180904.1 | 0.0 | two-component response regulator ARR12-like | ||||
Refseq | XP_028223105.1 | 0.0 | two-component response regulator ARR12-like | ||||
Swissprot | Q6K8X6 | 1e-140 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A445EYI6 | 0.0 | A0A445EYI6_GLYSO; Two-component response regulator | ||||
STRING | GLYMA09G14650.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-127 | response regulator 12 |
Publications ? help Back to Top | |||
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