PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1078430.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 440aa    MW: 46623.7 Da    PI: 6.5995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1078430.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12239284555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Lj6g3v1078430.1 239 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 284
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17232294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-13232288No hitNo description
PROSITE profilePS5088817.39234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16236293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MQPCSREMQG SINSFLTTTT TTTTNNPSQI SLQDLHHHHH HHNTTTTQIQ NSPTMNNHHQ  60
QLNPQFDPTS HDDFLEQMLS TLPSFWDPNS DLSAETTPDN VAAFPFDEHS TLNSKFRNHQ  120
ITSPTTKAAA ALMLQQHLLQ MPANDVVDPT NFFKSPNPGG EASASVQALY NGFTGSLNGT  180
QPQQHFQHPP QGNSNQIQGQ NFGATNQAPP ASGSAGGGGN QGQAKPRVRA RRGQATDPHS  240
IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA  300
VAPLVADISS EGGGGGGGGD CVTNGAGGVL PRSTTTAAST TNDSLTMTEH QVAKLMEEDM  360
GSAMQYLQGK GLCLMPISLA TAISTATCHT RSPLIPNNLA NLAAAAASNG EGPSSPNMSV  420
LTVQSAVAGN DSTVKDVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.201700.0pod| protoplast
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1078430.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103000.0AP010300.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjB04H20, BM2019, complete sequence.
GenBankFJ3753040.0FJ375304.1 Lotus japonicus roothairless1/slippery gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125630.10.0transcription factor bHLH66
SwissprotQ9ZUG91e-96BH066_ARATH; Transcription factor bHLH66
TrEMBLD0PX880.0D0PX88_LOTJA; Roothairless1/slippery
STRINGXP_007138416.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-65LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]