PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1078430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 440aa MW: 46623.7 Da PI: 6.5995 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6e-12 | 239 | 284 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Lj6g3v1078430.1 239 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 284 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-17 | 232 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-13 | 232 | 288 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 234 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 236 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 239 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 240 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MQPCSREMQG SINSFLTTTT TTTTNNPSQI SLQDLHHHHH HHNTTTTQIQ NSPTMNNHHQ 60 QLNPQFDPTS HDDFLEQMLS TLPSFWDPNS DLSAETTPDN VAAFPFDEHS TLNSKFRNHQ 120 ITSPTTKAAA ALMLQQHLLQ MPANDVVDPT NFFKSPNPGG EASASVQALY NGFTGSLNGT 180 QPQQHFQHPP QGNSNQIQGQ NFGATNQAPP ASGSAGGGGN QGQAKPRVRA RRGQATDPHS 240 IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA 300 VAPLVADISS EGGGGGGGGD CVTNGAGGVL PRSTTTAAST TNDSLTMTEH QVAKLMEEDM 360 GSAMQYLQGK GLCLMPISLA TAISTATCHT RSPLIPNNLA NLAAAAASNG EGPSSPNMSV 420 LTVQSAVAGN DSTVKDVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 248 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.20170 | 0.0 | pod| protoplast |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1078430.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010300 | 0.0 | AP010300.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjB04H20, BM2019, complete sequence. | |||
GenBank | FJ375304 | 0.0 | FJ375304.1 Lotus japonicus roothairless1/slippery gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029125630.1 | 0.0 | transcription factor bHLH66 | ||||
Swissprot | Q9ZUG9 | 1e-96 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | D0PX88 | 0.0 | D0PX88_LOTJA; Roothairless1/slippery | ||||
STRING | XP_007138416.1 | 1e-177 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4778 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-65 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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