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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj6g3v0959410.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
SRS |
| Protein Properties |
Length: 326aa MW: 34562.4 Da PI: 8.4123 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj6g3v0959410.2 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 211.7 | 1.8e-65 | 114 | 277 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94
gta+CqdCGnqakkdC h+RCR CCksrgfdC thvkstWvpaa+rrerq +++ a++ ++++++ ++k++r ++++++++s+t++s++
Lj6g3v0959410.2 114 GGTATCQDCGNQAKKDCGHRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQVMAERAAAAGSSASTSGHAKKPRLVasQTTTTTTTSHTSTSNT 207
5889***********************************************9999998888888899999999987445666777889999999 PP
DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++++++etss lP++v+++avf+cvrv++vd ge+e+aYq+ v+igGh+fkG+Ly+qG+e+
Lj6g3v0959410.2 208 TPPRSFETSSshqdvsfkesLPRQVRAPAVFKCVRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVEN 277
*******9999********************************************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MWPGASSARP ISYSHVASDM VGLRDVFLVA PASSFNHHSE SLMPDPHLNS SNNPVTALGV 60
GMIPLLGGGI QLWHDQQQQQ QHEQNYLKKH ALVEHDNGDG GGGGITALVA TSGGGTATCQ 120
DCGNQAKKDC GHRRCRSCCK SRGFDCPTHV KSTWVPAARR RERQVMAERA AAAGSSASTS 180
GHAKKPRLVA SQTTTTTTTS HTSTSNTTPP RSFETSSSHQ DVSFKESLPR QVRAPAVFKC 240
VRVTAVDGGE DEFAYQAMVK IGGHLFKGLL YNQGVENRDG YPDLSELHLG GRNGVSSSSP 300
MMNPSFDVYV ASGSGGFLGG SSTYGN
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.4 | 2e-85 | Lateral root primordium (LRP) protein-related |
