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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0959410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SRS | ||||||||
Protein Properties | Length: 390aa MW: 41128.7 Da PI: 8.4096 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 211.1 | 2.8e-65 | 178 | 341 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94 gta+CqdCGnqakkdC h+RCR CCksrgfdC thvkstWvpaa+rrerq +++ a++ ++++++ ++k++r ++++++++s+t++s++ Lj6g3v0959410.1 178 GGTATCQDCGNQAKKDCGHRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQVMAERAAAAGSSASTSGHAKKPRLVasQTTTTTTTSHTSTSNT 271 5889***********************************************9999998888888899999999987445666777889999999 PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++etss lP++v+++avf+cvrv++vd ge+e+aYq+ v+igGh+fkG+Ly+qG+e+ Lj6g3v0959410.1 272 TPPRSFETSSshqdvsfkesLPRQVRAPAVFKCVRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVEN 341 *******9999********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.4E-60 | 180 | 340 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.1E-26 | 182 | 224 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.7E-26 | 292 | 339 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEKMMKREQI YQTPSVVATT RRLPSDSGGA FADWSATPPS SSAAATIPGH ASDLSLGFNA 60 ASAGMWPGAS SARPISYSHV ASDMVGLRDV FLVAPASSFN HHSESLMPDP HLNSSNNPVT 120 ALGVGMIPLL GGGIQLWHDQ QQQQQHEQNY LKKHALVEHD NGDGGGGGIT ALVATSGGGT 180 ATCQDCGNQA KKDCGHRRCR SCCKSRGFDC PTHVKSTWVP AARRRERQVM AERAAAAGSS 240 ASTSGHAKKP RLVASQTTTT TTTSHTSTSN TTPPRSFETS SSHQDVSFKE SLPRQVRAPA 300 VFKCVRVTAV DGGEDEFAYQ AMVKIGGHLF KGLLYNQGVE NRDGYPDLSE LHLGGRNGVS 360 SSSPMMNPSF DVYVASGSGG FLGGSSTYGN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0959410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027345230.1 | 1e-129 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 3e-86 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A4D6KMP0 | 1e-126 | A0A4D6KMP0_VIGUN; Uncharacterized protein | ||||
STRING | XP_007141493.1 | 1e-111 | (Phaseolus vulgaris) | ||||
STRING | XP_010269431.1 | 1e-111 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 2e-93 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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