PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0933490.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 718aa    MW: 78893.1 Da    PI: 4.8502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0933490.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.8e-12656699146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+W++++ el+++av+++G++ ++ I + ++  Rt+ q+k+++ k
  Lj6g3v0933490.2 656 RGKWSKQDTELFYEAVREFGTD-FSMIQQLFP-DRTRHQIKLKYKK 699
                      89********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159638.3E-26649716No hitNo description
Gene3DG3DSA:1.10.10.602.7E-8652699IPR009057Homeodomain-like
PROSITE profilePS5129310.062654702IPR017884SANT domain
SMARTSM007173.2E-10655703IPR001005SANT/Myb domain
SuperFamilySSF466895.98E-11657705IPR009057Homeodomain-like
CDDcd001675.50E-8658699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MDAFDDILSG APAPRARRGS KFMPKAKLKQ LPQKEISASE HATSSKDGEN VPVASSATST  60
KSGGILNECH DAVASTLSTS AEDSIRSNHR PQEELSNLED ATKSASEGLE AGLVTNSIPE  120
TNLNNGAKQP IHPANAVENE NTVAAQSTTN SSISRMEEPP KSGEGSIPDS NKNLEHIDNS  180
VPVIPDANFK SALENNAVTF ESNIHSNLNS GREQEAVSGE SEWNPFSDAL PDPGTRNARK  240
FQPKIKPRPR VSIAPAIASA SSSDMMEKST QLHVSCTNEV QSFQFSGDGI GGQNTFSEDK  300
RNLASVTPSQ PDSLNAMPSE VTAHDGTRDS ASSFGKPAPD NLTTQDPLTL NEAAVFEEDD  360
THTNIRRLET EEVVDLNTAC SNGGVFDYQS IDSATDPTSE IPVNEELTNA ADCPTLADVL  420
HKYVTVEKEV ANGRKKDSSL RKHRRSTAGE EDKGGKTARQ LRKSAAREPA NSSLNKDVDD  480
DGDIDPLYNY NIDELEENDD EDELDYSSKK KTTSTSSKKK SVAKNEKTSQ KRKKSNDDLE  540
NTTKKSLKKF SHSTLRRKRC EDLLKTPEDE WDPRNMPIKD IIILAEYKER LAKKDPTTSK  600
TSSTNQSGGD PFYEAGANYE EGFFGSENPN DNQDTENVTD TTALINYQSF MDKAPRGKWS  660
KQDTELFYEA VREFGTDFSM IQQLFPDRTR HQIKLKYKKE ERQHPLQLSD AVNSRSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517533KKKSVAKNEKTSQKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.73710.0cell culture| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0933490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045280.0AP004528.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT03B03, TM0057b, complete sequence.
GenBankAP0067090.0AP006709.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT41D19, TM0592, complete sequence.
GenBankAP0073020.0AP007302.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT10F20, TM0796, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191523.10.0uncharacterized protein LOC114377281 isoform X3
TrEMBLA0A445HVC40.0A0A445HVC4_GLYSO; Uncharacterized protein
STRINGGLYMA11G01285.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-40MYB_related family protein