PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0831440.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 495aa    MW: 55555.7 Da    PI: 5.2946
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0831440.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06148167626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C+ff++ + C++G++C+ +Hg
  Lj6g3v0831440.2 148 CKFFLQ-HRCRFGANCRQSHG 167
                      ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.601142169IPR000571Zinc finger, CCCH-type
SMARTSM004432.0E-12293339IPR000467G-patch domain
PROSITE profilePS5017412.647295351IPR000467G-patch domain
PfamPF015852.1E-11295337IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MGSSEERVLL EEQLELQLQE QRDSLSAIDE ALLSDPTNSE LVAVHEELVQ AIKDAEEGLL  60
HLKRARLLQE VDSVLHNTNM FTEEEKVEPL DPTDVEPEPL EEKSYSIGSK CRFRHKDGRW  120
YNGQVVQLDN SVAKISFLTP TSENMLMCKF FLQHRCRFGA NCRQSHGVDV QLSSLKRYVP  180
TIWKPSLVGS SIWALSDAKT GIWREAELEL WDEKAGVGQV VFRDSGSSMK LCAEEIVLSE  240
YAEVSDLESD SSLEQSESSD YDEEESQGLG FLESTNLQKG IQTDTALFAK WENHTRGIAS  300
KMMANMGFRE GMGLGVTGQG MLDPIPVKVL PPKQSLDHAL DSRKGEENNE KQGKKRSRGG  360
KRKREKKFAE ANRTAKEEEE SAPDVFTLIN NQLAMHGEAS NGGSMKKQQS KDSGEVKKVD  420
RKVLVAYEDE VKGLKMRVAK LEQMVNANKK EKAVYEAAMR KLVETRKALA EAESVHASAS  480
NTVVGKEKEK RWLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352358GKKRSRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0831440.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341542.10.0zinc finger CCCH domain-containing protein 18
SwissprotQ6K6870.0C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A0B2PY900.0A0A0B2PY90_GLYSO; Zinc finger CCCH domain-containing protein 18
TrEMBLI1N0J90.0I1N0J9_SOYBN; Uncharacterized protein
STRINGGLYMA18G10210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1012922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-163C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]