PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0673230.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 462aa    MW: 51819.8 Da    PI: 5.9784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0673230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13288331755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er+RRd+i++++ +Lr+l+Pk      +K++ a+iL+ A++YIk+Lq
  Lj6g3v0673230.1 288 VTERNRRDKIKKGLYTLRSLVPKI-----TKMDIASILTDAIDYIKELQ 331
                      57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-1711153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.313281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-13283334No hitNo description
SuperFamilySSF474597.2E-17284347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-15287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17288345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10289331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.55E-5395455No hitNo description
Gene3DG3DSA:3.30.70.2600.001395454No hitNo description
CDDcd048732.10E-5396460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSGGFEVVEW LRPLVETNDW DYAVAWKFGV DPTRFIEWIG CCCGGSNKEN MEHAVMPKVE  60
ILSEESHLNL ICRDTQFPHQ VRTKTCEALS KLPLAMSLYS GVHGEVAISQ QPKWLIQEDS  120
SGTQVLIPVV GGLIELFTAK LIPKDIDVIE FITENCCVSV KKEAISAQSS TTSLNFNEHF  180
TLAAPGVHLP PVNQCSSNPS TEGPSGGSNL SLERHQSFDS KFVCMIPHKY MNKPVEISPI  240
IKSKKPKYNE TSGKRKRGLS SDRGHSEEDQ GKLARETQKE GYSAKNLVTE RNRRDKIKKG  300
LYTLRSLVPK ITKMDIASIL TDAIDYIKEL QRQENELKEE VEALEVEDCE KYTTQEQGVT  360
SSLSHTNVDQ TSSDCTENTK MEVQAEVHHL GGTDFLIKLY CDHKQGRFSR LMEAMHSFGL  420
HVVNANMTTL NGKVLNILTV EATEQDIHQT ELKEYLIQQI GC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291298NRRDKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0673230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027920384.10.0transcription factor bHLH90
TrEMBLA0A371HXI00.0A0A371HXI0_MUCPR; Transcription factor bHLH90 (Fragment)
STRINGXP_007153735.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-40bHLH family protein