PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0521560.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-X1
Protein Properties Length: 476aa    MW: 53743.2 Da    PI: 8.6907
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0521560.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.96.6e-06421118
         zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                     CG+H C++ C+ G+CppC
  Lj6g3v0521560.2  4 CGRHACKRRCCDGDCPPC 21
                     ****************** PP
2zf-NF-X116.91.4e-052549119
         zf-NF-X1  1 CG......kHkCqklCHeGpCppCp 19
                     CG       HkC ++CH+G C pCp
  Lj6g3v0521560.2 25 CGrrlrckSHKCPSPCHRGACAPCP 49
                     666666667***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.014423IPR000967Zinc finger, NF-X1-type
CDDcd060083.95E-102169No hitNo description
SMARTSM004380.143150IPR000967Zinc finger, NF-X1-type
SMARTSM004384588109IPR000967Zinc finger, NF-X1-type
SMARTSM0043887117162IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5199231IPR000967Zinc finger, NF-X1-type
SMARTSM004380.067241259IPR000967Zinc finger, NF-X1-type
SMARTSM0043839304326IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRDCGRHACK RRCCDGDCPP CAEICGRRLR CKSHKCPSPC HRGACAPCPI MVTISCACGE  60
THFEVPCGTE MDQKPPKCPK RCPITPLCRH ALNVKPHKCH YGACPPCRLP CGEEYQCGHA  120
CKLRCHGAKP PPTPEFTLKP KKKKIIQQSE SIPGTPCPPC PELVWRPCVG QHIGAERMMV  180
CSHKSQFSCE NLCGNPLRCG NHYCTKTCHA LENKSSMNQL LRGEPCEDCS LSCQKEREPT  240
CPHHCPRRCH PGDCPPCKVL IKRSCHCGAM VHVFECIYYN SLSAKDQVSV RSCGGPCHRK  300
LPNCTHLCPE TCHPGQCPNP EKCCKKVTVR CKCHTLKKEW LCQDVQAAYH RAGCNPMDIP  360
KNQFGIGLIP CNSDCKSKVQ IVESELQLRK SRVTEVKEPD NEKPVPKRRK RRDRVIEPKE  420
TTKLQKIISR TKQLLLLIFI LVILVAAAYY GYKGLLRLND WMNEVDEKRQ RYSRIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405411PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.33011e-68pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0521560.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407341e-132BT140734.1 Medicago truncatula clone JCVI-FLMt-22I2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500492.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S2Y8E70.0A0A1S2Y8E7_CICAR; NF-X1-type zinc finger protein NFXL2
STRINGXP_004500492.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors