PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0468630.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 314aa    MW: 35645.1 Da    PI: 6.1861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0468630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-13114165155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++++L+
  Lj6g3v0468630.1 114 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YIQRGDQASIIGGAINFVRELE 165
                      79****************************...9*****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-13112169No hitNo description
Gene3DG3DSA:4.10.280.105.1E-14112169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNRERNREMA LEAVVYDPQA QDPFGYGFKD LYNCNFLADT TNWGYEKLNL EKDDKQIENY  60
PYGDWSSSTT SSMLPHMNEL QETTDPSNTS NFASARPKRR RARSRKNKEE IENQRMTHIA  120
VERNRRKQMN EYLSVLRSLM PESYIQRGDQ ASIIGGAINF VRELEQRLQF LGAKKESEGK  180
SENEAATASM PFSEFFSFPQ YSTSASGCDD SAAIGEHVGG VQSGIADIEV TMVESHANLK  240
IRSKKRPKQL LKMVTGLHTM RLTILHMNVT TTGEIVLYCL SVKVEEDCKL GSVDDIAAAV  300
YQMLDRIHQE AMLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114125RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.204844e-40root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0468630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061270.0AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207714.11e-171transcription factor bHLH94
SwissprotQ9C7T46e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLC0JP340.0C0JP34_LOTJA; Putative basic helix-loop-helix protein BHLH26 (Fragment)
STRINGGLYMA20G37550.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]