PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0433880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 592aa    MW: 64439.9 Da    PI: 5.2333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0433880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.23.1e-1412235851374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAeav++++++la++l++++   a++++ +m+++a+yf++ALa+r+++       ++p + +  ++  ++l++   f+e +P+lkf+
  Lj6g3v0433880.1 223 LVHALMACAEAVQKENHKLADTLVKHIGVVAASQAGAMRKVASYFAQALARRIYG-------IFPDTVD--SSLNDVLHM--HFYESCPYLKFA 305
                      689****************************************************.......2332222..246677666..4*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea++++ rvH++Df+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++l+d
  Lj6g3v0433880.1 306 HFTANQAILEAFATAGRVHVVDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNSDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLAD 399
                      ********************************************************************************************** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres... 279
                      l++++L+++pgEa+aVn+v++lhr+l++++s+++    v+ ++k+l+Pk+v++veqea+hn++ F++rf+eal+yys+lfdsle  +++ s   
  Lj6g3v0433880.1 400 LDPNMLEIRPGEAVAVNSVFELHRMLARPGSIDK----VMGTIKKLNPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGAASTGSdss 489
                      **************************99999999....*********************************************77766655557 PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                       +++++ +++lg++i+nvvaceg +r+erhetl +Wr r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++Sa
  Lj6g3v0433880.1 490 GQDVVMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSA 583
                      99******************************************************************************************** PP

             GRAS 373 Wr 374
                      W+
  Lj6g3v0433880.1 584 WK 585
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011297.1E-3450123No hitNo description
PfamPF120418.2E-3750117IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098569.282197564IPR005202Transcription factor GRAS
PfamPF035141.1E-138223585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:0090378Biological Processseed trichome elongation
GO:2000033Biological Processregulation of seed dormancy process
GO:2000273Biological Processpositive regulation of receptor activity
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MKRDHQDSCK GGNTGSVRNS VGAVKGECSS MPTGKAKMWE EEHGGAAGVD ELLAALGYKV  60
RSSDMADVAQ KMEQLEMVMG IAQEDGISHL ASDTVHYDPT DLYSWVQTIL TELNPPPTTT  120
TTLLDPSSLL ENHQINDPLN PSSILLNNNA SRVFNDDSEY DLRAIPGIAA YPPTQDNSND  180
ETEPKRLKTW SIKSDSALSP PAQVPETARP VVLVDTQETG VRLVHALMAC AEAVQKENHK  240
LADTLVKHIG VVAASQAGAM RKVASYFAQA LARRIYGIFP DTVDSSLNDV LHMHFYESCP  300
YLKFAHFTAN QAILEAFATA GRVHVVDFGL KQGMQWPALM QALALRPGGP PTFRLTGIGP  360
PQPDNSDALQ QVGWKLAQLA QTIGVQFEFR GFVCNSLADL DPNMLEIRPG EAVAVNSVFE  420
LHRMLARPGS IDKVMGTIKK LNPKIVTIVE QEANHNGPVF VDRFTEALHY YSSLFDSLEG  480
AASTGSDSSG QDVVMTEVYL GEQICNVVAC EGVDRVERHE TLVQWRTRMG SAGFNPVHLG  540
SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA TSAWKLPQPS ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6821858414378Protein SCARECROW
5b3h_A2e-6821858413377Protein SCARECROW
5b3h_D2e-6821858413377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.166420.0pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0433880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097870.0AP009787.1 Lotus japonicus genomic DNA, clone: LjT40K11, TM2021, complete sequence.
GenBankAP0097900.0AP009790.1 Lotus japonicus genomic DNA, clone: LjT15P09, TM2024, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027923038.10.0LOW QUALITY PROTEIN: DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A4D6MDP50.0A0A4D6MDP5_VIGUN; DELLA protein
STRINGXP_007163387.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein