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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lj5g3v2300300.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
C3H |
| Protein Properties |
Length: 299aa MW: 31669.7 Da PI: 9.5832 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj5g3v2300300.1 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.6 | 4.4e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + + Ck+GdrC+FaHg+
Lj5g3v2300300.1 102 KTRMCNKYNSSEGCKFGDRCHFAHGE 127
899*********************96 PP
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| 2 | zf-CCCH | 36.8 | 6.6e-12 | 267 | 290 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
kt+lC +fa+ G C +G+rC+FaHg
Lj5g3v2300300.1 267 KTKLCENFAK-GSCTFGERCHFAHG 290
9*********.*************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.286 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.06E-6 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-7 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.89 | 41 | 58 | No hit | No description |
| SuperFamily | SSF90229 | 1.31E-8 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.9E-15 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.887 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.3E-5 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.34 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 2.48E-14 | 168 | 244 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 4.4E-15 | 171 | 242 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 5.3E-10 | 172 | 242 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 13.816 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 8.8E-11 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.09E-12 | 177 | 238 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-15 | 262 | 297 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.5E-7 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.493 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.22E-8 | 265 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-9 | 267 | 290 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MDRKRGRPEG AFNGNGGAKK SKPEMESFTT GLGSKSKPCT KFFSTSGCPF GDGCHFLHYV 60
PGGFKAISQM INVGSSPTIP QMGRNPVPPP SFPDGSSPPV VKTRMCNKYN SSEGCKFGDR 120
CHFAHGEWEL GRPTLPPYED PRGFGQMQSN RGGGRIEPPP PGRGAAAAGF GASATAKISI 180
NASLAGAIIG KNGVNSKQIC RVTGAKLSIR EHDSDPNLKN IELEGSFDQI NQASAMVHEL 240
ILSVSSVSGP PAKNFSSQHS APGSNLKTKL CENFAKGSCT FGERCHFAHG TDELRRPGM
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