PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2298100.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 92aa    MW: 10404.9 Da    PI: 10.1869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2298100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09653347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +++ +a + + ++   +W + a+ +g g+t+ +++ ++qk+
  Lj5g3v2298100.1  6 VWTAKQNKKFENALAIYNKDtpdRWQKLAKAVGGGKTEDEVRIHYQKL 53
                     7******************9**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.042258IPR017884SANT domain
SMARTSM007172.7E-6356IPR001005SANT/Myb domain
SuperFamilySSF466892.11E-12561IPR009057Homeodomain-like
PfamPF002495.1E-7653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-4754IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASSSVWTAK QNKKFENALA IYNKDTPDRW QKLAKAVGGG KTEDEVRIHY QKLVEDVKLI  60
EEGHVPLPNY RNVAPAGGRA KEEKRMKALN LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-26292693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2298100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097761e-140AP009776.1 Lotus japonicus genomic DNA, clone: LjT18N03, TM1951, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356969.14e-42protein RADIALIS-like 4
SwissprotF4JVB84e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A394D9A22e-39A0A394D9A2_LUPAN; Uncharacterized protein
STRINGGLYMA14G08101.15e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-32RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]