PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2241010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 607aa    MW: 64897.3 Da    PI: 9.5157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2241010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-057597123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Lj5g3v2241010.1 75 FICEVCNKGFQREQNLQLHRRGH 97
                     89*******************88 PP
2zf-C2H211.80.00074151173123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Lj5g3v2241010.1 151 WKCDKCSKKYAVQSDWKAHSKTC 173
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-77497No hitNo description
Gene3DG3DSA:3.30.160.606.8E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355130116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAASSSSASL FGFREEDNQM NQQQQHSLVA AAPSSSATPS APPPQKKKRN QPGTPNPDAE  60
VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKTNKE PKRKVYLCPE  120
PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARQP PNLSSAIGSH LYGSSSNNMG LALSHVGPQL  240
SNMQPSDLNN NNQSAELLRL GGAAGRTGVQ FDQMFQTSLG PASFRPTQQS VASFFLPHES  300
NQNYHHDQQQ QQQGLVQQNK SFQGLIQLSE LNNHHHHNHN SNSPSGGANN NSLFNLPFLS  360
SNNSTNSSNT SFSDHFNENG SVNDQATNFF TGNVMGGGGG GGSHQQHHQT TATTSAAPSL  420
FSTSLQANNS AMAHMSATAL LQKAAQLGTT SSNSTASLLK SFGSSSSSSA PKPMAGAAAN  480
YGGVGVGMFN EQNNLQDLMN SFAAASGGGG HNNVSSMFET GGFEAYDRAG GVSRDQQKMQ  540
AAMSIGGSDR LSTRDFLGVG QIVRSMSGGG QREQQHAFNA LEAERNAAAA TAAPSGQSFG  600
GGGGNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33147208364Zinc finger protein JACKDAW
5b3h_F2e-33147208364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390402TGNVMGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.13190.0flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2241010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097920.0AP009792.1 Lotus japonicus genomic DNA, clone: LjT42M11, TM2098, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019441741.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-144IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A4P1RKH70.0A0A4P1RKH7_LUPAN; Uncharacterized protein
STRINGGLYMA10G42660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-108indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]