PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2179600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 357aa    MW: 39531.2 Da    PI: 8.2951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2179600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.4e-15274299126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +++tG C+yGd C+FaHg
  Lj5g3v2179600.1 274 FKTELCNKWQETGACPYGDHCQFAHG 299
                      79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-18269306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-11270305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676273301IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9273300IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-12274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11307340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8307341IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859311339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MQMHNKNACS PSSNGGGFRT ATTAGSFASM YDYEKLPSLS GNSSGASLYP YTGSAAQYDS  60
CFIQKQQDMV NRHNMCLTRL LETSKEVEAL QQENGQLRAV NNELQKQLDQ IVIQASLENR  120
FGGVGGGCGG SAGQTPPSAA FEHLAHAFRS FQIGDGKENC ADWNTNNINN MNDKEMQEVS  180
DHASPTSVIE SNNGNVEVER YSLPKSISVR SKGYWKWPHP VPPAATTNNA CRPKNATRPR  240
ASSTPSDTVQ KVYVRGGKKE EEPLEMVVYN QGMFKTELCN KWQETGACPY GDHCQFAHGI  300
GELRPVIRHP RYKTEVCRMV LSGVVCPYGH RCHFRHALTE QEKAVSQSKP RTTKMER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-21274340470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2179600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470126.11e-166zinc finger CCCH domain-containing protein 15
TrEMBLA0A072VQ631e-165A0A072VQ63_MEDTR; Putative transcription factor C3H family
STRINGXP_004497020.11e-162(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-77C3H family protein