PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj5g3v2152710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 64aa MW: 7597.95 Da PI: 9.8849 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.9e-09 | 8 | 36 | 20 | 48 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 G +W+t+++ g+ R++k+c++rw +yl Lj5g3v2152710.1 8 GIQCWRTVPKLAGLLRCGKSCRLRWINYL 36 4449*********99************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.115 | 1 | 40 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-12 | 4 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.78E-14 | 4 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 8 | 36 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.135 | 37 | 64 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-8 | 40 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 64 aa Download sequence Send to blast |
MNFILNNGIQ CWRTVPKLAG LLRCGKSCRL RWINYLRPDL KRGDFTKMEE DQIIQLHSCL 60 GNRY |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:17015446, PubMed:19161942). Expressed in stomatal guard cells (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj5g3v2152710.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 8e-43 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217805.1 | 2e-37 | myb-related protein 315-like | ||||
Swissprot | Q9LTC4 | 4e-29 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A0B2S601 | 4e-36 | A0A0B2S601_GLYSO; Myb-related protein 315 | ||||
TrEMBL | A0A2I0KKL9 | 2e-36 | A0A2I0KKL9_PUNGR; Uncharacterized protein | ||||
TrEMBL | A0A445KKP1 | 5e-36 | A0A445KKP1_GLYSO; Myb-related protein 315 | ||||
STRING | GLYMA19G07830.1 | 9e-37 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14340.1 | 1e-35 | myb domain protein 40 |