PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2112180.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 274aa    MW: 29745.8 Da    PI: 6.2413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2112180.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-051642041055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Lj5g3v2112180.1 164 KKRKEKLGERIAALQQLVSPF-----GKTDTASVLHEATGYIKFLQ 204
                      899999*************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.915154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-4160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-6163208No hitNo description
SuperFamilySSF474593.27E-12163216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-8164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAAKEEFEVD HVTTPITPGT SFSQLLFGDD DDVVHDEKAF AFGTVDQTFN NNNNNNLSTN  60
SSLFSIHNTP KMLCFGNNYQ NEGDLMNNVT PQKSSIITSS DNNSSSASNS CNTSFNYSLP  120
MSNSLQKKRN GSGQEPGTTA NVGRQKPPYK KTKAENPTST GHAKKRKEKL GERIAALQQL  180
VSPFGKTDTA SVLHEATGYI KFLQDQVQVL CSPYLQRLPS CSQPGDGDND GGEEEAEKLN  240
LRSRGLCLIP VSCTVHVAST NGADFWSPGN NVKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2112180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064300.0AP006430.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT33L13, TM0327, complete sequence.
GenBankFJ3797670.0FJ379767.1 Lotus japonicus putative basic helix-loop-helix protein BHLH15 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570212.11e-102transcription factor bHLH113 isoform X1
TrEMBLC0JP320.0C0JP32_LOTJA; Putative basic helix-loop-helix protein BHLH15
STRINGXP_004496925.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-47bHLH family protein