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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lj5g3v2110900.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
FAR1 |
| Protein Properties |
Length: 522aa MW: 60924.4 Da PI: 8.44 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj5g3v2110900.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 89.7 | 4e-28 | 48 | 135 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
+fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r++++++t+Cka+++vk++ dgkw ++++ +eHnHel p
Lj5g3v2110900.1 48 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGG---SNRRSSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLP 135
5****************************************999888...8889999*******************************975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010018 | Biological Process | far-red light signaling pathway |
| GO:0042753 | Biological Process | positive regulation of circadian rhythm |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 522 aa
Download sequence Send
to blast |
MGDALNGEQH RSDAVVVSPN TDLSLFDGDR DFEPHTGIEF KSHEAAYSFY QEYAKSMGFT 60
TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDGGSNRRSS VKKTDCKACM HVKRKPDGKW 120
IIHEFIKEHN HELLPALAYH FRIHRNVKLA EKNNMDILHA VSERTRKMYV EMSRQSGGCL 180
NIESLVGDLN DQFKKGQYLA MDEGDAQVML EYFKHIQKEN PNFFYSIDLN EEQRLRNIFW 240
IDAKSINDYL SFNDVVSFDT SYIKSNEKLP FAPFVGVNHH CQPILLGCAL VADETKPTFS 300
WVLKTWLRAM GGQAPKVIIT DQDKSLKTAI EEVLPNVRHC YSLWHILERI PENLSFVIKQ 360
YKNFLPKFHK CIFRSWTDEQ FEMRWWKIVT RFELRDDIWF QSLYEDRKNW VPTYMGDTFL 420
AGMSTPQRSE SMNSFFDKYI HKKITLKEFV KQYGVILHSR YDEEAIADFD TLHKQPALKS 480
PSPWEKQMST VYTHAIFKKF QVEVLGVAGC QSRIYSSGLR KE
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |
| Publications
? help Back to Top |
- Domergue F, et al.
Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
Plant Physiol., 2010. 153(4): p. 1539-54
[PMID:20571114] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Wang C, et al.
SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
J Genet Genomics, 2015. 42(4): p. 161-8
[PMID:25953354] - Wang W, et al.
A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
J Integr Plant Biol, 2016. 58(1): p. 91-103
[PMID:25989254] - Ma L, et al.
Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
Mol Plant, 2016. 9(4): p. 541-57
[PMID:26714049] - Siddiqui H,Khan S,Rhodes BM,Devlin PF
FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
Front Plant Sci, 2016. 7: p. 175
[PMID:26941752] - Liu L,Li B,Liu X
FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
Plant Signal Behav, 2016. 11(10): p. e1238545
[PMID:27660915] - Ma L,Xue N,Fu X,Zhang H,Li G
Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
New Phytol., 2017. 213(4): p. 1682-1696
[PMID:27859295] - Liu Y, et al.
Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
Plant Cell, 2017. 29(9): p. 2269-2284
[PMID:28842534] - Joly-Lopez Z, et al.
Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
Front Plant Sci, 2017. 8: p. 2027
[PMID:29250089]
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