PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2099610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 278aa    MW: 29935.7 Da    PI: 7.6303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2099610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086108130123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ C+k F++   L  H  +H
  Lj5g3v2099610.1 108 HKCSVCDKAFPSYQALGGHKASH 130
                      79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-14107132IPR007087Zinc finger, C2H2
SMARTSM003550.016108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432108135IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-10108130No hitNo description
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-10157184No hitNo description
PfamPF139124.1E-13162186IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411162184IPR007087Zinc finger, C2H2
SMARTSM003550.19162184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MALETLNSPT AATTPFRSSY QQEEEEEELH HHEPWTKKKR SKRPRFDNPT TTEEEYLALC  60
LIMLAQSGNN NNKNNNTDNN TNTLRAESSS NSQSQSPPQQ QPPLKLTHKC SVCDKAFPSY  120
QALGGHKASH RKSSSENQTP AAAAVNDNAS VSTSTGNGGK MHECSICHKS FPTGQALGGH  180
KRCHYEGGKS SNSTNSNVHA NTSSAVTTTS DGGAASAHSL RGFDLNLPAP LTEFWTPLGI  240
GGGDSRTNKI RSGEQEVESP LPVTAKRPRL FFDGGETA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.19140.0cell culture| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2099610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063740.0AP006374.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT47L09, TM0218, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555988.11e-105zinc finger protein ZAT10
TrEMBLI1NG211e-104I1NG21_SOYBN; C2H2-Zn transcription factor
STRINGGLYMA20G26940.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-45salt tolerance zinc finger