PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2099550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 316aa    MW: 34757.4 Da    PI: 4.9745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2099550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-112402801055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rrRR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Lj5g3v2099550.1 240 RRRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 280
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-14228296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13235289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-12236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-12239284No hitNo description
PfamPF000102.3E-8240280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSQLLSNCSV PDHQYENYNL EIPPASWSGH ESTIMSVTGI NCSSYVHANA NNSETNFFGF  60
SQGSSSNITN CSNMFPTTSG GNCCFDDPVA NIGFMSIGDA KFNTFSVQGN ENSDEEVIGD  120
KAHKQCEEPV SEPPEEDITS NLEKSGKRSR SAMEVQKNKT NVKSRKKAKS AFTSNTEEDR  180
NLGLHGQSLS SCCSEDDDSN ELNGGGSSSL DQKDSTTIKL KGKSRSERGS ATDPQSIYAR  240
RRREKINERL KILQNLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD LWMYAPIAFN  300
GMNIGLDLNL FPTKQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2099550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063740.0AP006374.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT47L09, TM0218, complete sequence.
GenBankFJ3797500.0FJ379750.1 Lotus japonicus putative basic helix-loop-helix protein BHLH10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364760.11e-137transcription factor bHLH84
TrEMBLC0JP150.0C0JP15_LOTJA; Putative basic helix-loop-helix protein BHLH10
STRINGGLYMA20G26991.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-54bHLH family protein