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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2045560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | CPP | ||||||||
Protein Properties | Length: 483aa MW: 52595 Da PI: 8.2754 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.3 | 4.7e-16 | 200 | 238 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfa+g++C+e C C +C N+ Lj5g3v2045560.1 200 SCKRCNCKKSKCLKLYCECFASGVYCTEPCMCRNCLNQP 238 689**********************************86 PP | |||||||
2 | TCR | 49.2 | 1.1e-15 | 285 | 323 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce CkN Lj5g3v2045560.1 285 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEACKNA 323 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 9.7E-17 | 199 | 240 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.477 | 200 | 325 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.3E-11 | 202 | 237 | IPR005172 | CRC domain |
SMART | SM01114 | 8.2E-16 | 285 | 326 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.6E-11 | 287 | 323 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MQPVNLAASG SEHGIQYHPN GPITGQTQNN LPSVALMTSN PSEKMNDELL QATYRGMRRS 60 LDYEMASVQR KNSGGSSHIS SSTAKSDERG IENPLLPTKH TCDSHLNPLA TLKDYKSSKG 120 EPMSSQMQPN LPSSTSSMLL SSRQEGPQSM ENDLEPSEGE VQPAEDYTQS PGYMADEDFH 180 PNVPKKKRRK LELSGGGESS CKRCNCKKSK CLKLYCECFA SGVYCTEPCM CRNCLNQPIH 240 AETVLQARKQ IESRNPLAFA PKVIRSSVST PETRDDPNKT PASARHKRGC NCKKSSCLKK 300 YCECYQGGVG CSISCRCEAC KNAYGRKDGS GPSEIEAEPE EETKAREKSE VGKASQKTNI 360 QNTEDQSECA LPTTPSRRLL PLPFSSDGNP SRSFIATISA SGLIASQKLG ESNALQSQVT 420 LEKPFQTVPD DDDSSGHCIK ISSPKGKRIS SPRCENGSPH TRRGGRKLIL QSIPSFPSLA 480 PPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-16 | 204 | 322 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-16 | 204 | 322 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 190 | PKKKRRKL |
2 | 184 | 188 | KKKRR |
3 | 184 | 189 | KKKRRK |
4 | 185 | 189 | KKRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2045560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010442 | 0.0 | AP010442.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT127E18, TM1719, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143298.1 | 0.0 | hypothetical protein PHAVU_007G060500g | ||||
Swissprot | F4JIF5 | 1e-103 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | V7BBQ7 | 0.0 | V7BBQ7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143298.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 5e-77 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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