PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2045400.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 354aa    MW: 41006.9 Da    PI: 5.327
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2045400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22e-36411332103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+i++d++++++isws+ +nsfvv++++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ll+
  Lj5g3v2045400.1  41 FLTKTYDIVDDPSTNHIISWSTGNNSFVVWNPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEMFLRGQKDLLK 125
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k +
  Lj5g3v2045400.1 126 NIRRRKAN 133
                      *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6037130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNPQAQGRMK KEEFVGQSSS YSGGVPPQPM ECLQETGPPP FLTKTYDIVD DPSTNHIISW  60
STGNNSFVVW NPQAFSISLL PRFFKHNNFS SFVRQLNTYG FKKVDPDRWE FANEMFLRGQ  120
KDLLKNIRRR KANQSQAMQQ ALDPCVEVGW FGLDGEVDRL RRDRQVLMVE LVKLRQQQQS  180
TRAHIQAMEG RIKRTEQKQQ QMMSFLARAV QNPNFLQQLA QQKEWRKESE EAVSKKRRRP  240
IDQGPCELEH AEDSSEFVKL EQSHEYSDKL VEFEVSDLDY ALNIEGQCGS QNMMNVEQDH  300
VHLRRSSDQN IDEVFWQDLL DEGIGDQHVL DVEDVDVLAE QLGYLASGPN RRLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-243913518125Heat shock factor protein 1
5d5u_B4e-243913027129Heat shock factor protein 1
5d5v_B4e-243913027129Heat shock factor protein 1
5d5v_D4e-243913027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2045400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104430.0AP010443.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P10, TM1748, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363442.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-128HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A371E2E81e-176A0A371E2E8_MUCPR; Heat stress transcription factor A-6b (Fragment)
STRINGGLYMA20G28870.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B