PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2030810.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21407.8 Da PI: 8.5018 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.6 | 1.9e-07 | 20 | 70 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + + e+Er+RR ++ + Lr+ lP + ++K s ++ +Av++++ L Lj5g3v2030810.2 20 KINRREVERQRRTQMSVLCASLRSSLPLeL---IKGKRSVSDLIGEAVNHVQFL 70 667889**********************78...******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-11 | 17 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-6 | 18 | 74 | No hit | No description |
PROSITE profile | PS50888 | 11.712 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-4 | 20 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 20 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0041 | 24 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAEDKIQRII SSTSDNDEKK INRREVERQR RTQMSVLCAS LRSSLPLELI KGKRSVSDLI 60 GEAVNHVQFL KQKINALQIK RDELKEMMVN LSFVKTETVG ADHSSALGKC VSINLIPGGV 120 EVAVYGSGFE ENSTRLSVLM QILLQEGCDV VSCVSSLVNG RIFHTIKSEV KDLTCLDLAR 180 LQHRLDQAIL SR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2030810.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556078.3 | 2e-83 | transcription factor bHLH36 | ||||
Refseq | XP_028221504.1 | 2e-83 | transcription factor bHLH36-like | ||||
TrEMBL | A0A445F5C3 | 4e-82 | A0A445F5C3_GLYSO; Transcription factor bHLH120 isoform A | ||||
TrEMBL | I1NGM8 | 1e-82 | I1NGM8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G29130.1 | 2e-83 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 6e-30 | bHLH family protein |