PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2030790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27472.2 Da PI: 8.2439 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.2e-09 | 61 | 110 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e E++RR++i + ++ r++lP ++K ++ + ++YIk+Lq Lj5g3v2030790.1 61 MHRESEKQRRQEISKLCATFRSHLPLaY---IKGKRATSDHIHEGTNYIKHLQ 110 79************************55...99*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.687 | 57 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-8 | 58 | 114 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-12 | 58 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-8 | 59 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MNPFHSIDEL YFSSANYSLP IQTTTPLTLD QISPDPVMDI SDLPCAKDHK SSNIHEIKKW 60 MHRESEKQRR QEISKLCATF RSHLPLAYIK GKRATSDHIH EGTNYIKHLQ NNVKKLQDKR 120 DELMKLSNFN HVGSESANFA TYVIVHPCLG GIQIKCSYSF KKHAFPLSRV LDIVLKEGLN 180 VINCISTRTD DHRFIHTIQS EGPHFLMNET NYTELQSKLI AAISSSSQEE FDGRGVSYIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2030790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536494.2 | 3e-91 | transcription factor bHLH36 | ||||
Refseq | XP_028184038.1 | 3e-91 | transcription factor bHLH36-like | ||||
TrEMBL | A0A445IS07 | 6e-90 | A0A445IS07_GLYSO; Transcription factor bHLH36 | ||||
TrEMBL | K7LL60 | 6e-90 | K7LL60_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G38620.2 | 1e-90 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 4e-37 | bHLH family protein |