PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2029540.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 333aa    MW: 34964.8 Da    PI: 5.2231
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2029540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.8e-3767140274
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                      +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+p+i+e+tgt++ +a ++  
  Lj5g3v2029540.1  67 PAAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVsV 140
                      6789************************************************************7777743321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-2973145IPR005333Transcription factor, TCP
PROSITE profilePS5136927.5273127IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEMNPTHNGG FSEGENGTNS ADISPSETTV AMVEPPEQPP EMKEELTETE HRLVESFPTG  60
VITVAAPAAK KPSKDRHTKV EGRGRRIRMP ATCAARIFQL TRELGHKSDG ETIRWLLEQA  120
EPSIIEATGT GTVPAIAVSV GGTLKIPTSS PARPEGEDDN PRKRRRRPSN SEFIDIKDQA  180
SVCSGLAPIA QTAYGGAGGG LVPMWPVANG GGGGGGGNPT GPYFMFPNTA NQPQYWAIPA  240
NTVGPFFNVE GRPISGFVSA MQIAEAASAN SSSSTFAPAL SSPTTATTSS AVTTSSSSTQ  300
MLRDFSLEIY DKRELQFLGG SSAHSESPST SNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167PRKRRRRP
2161165RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2029540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073080.0AP007308.2 Lotus japonicus genomic DNA, chromosome 5, clone: LjT35J07, TM1672, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366958.11e-135transcription factor TCP19
SwissprotQ9LT894e-77TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A072VQN81e-129A0A072VQN8_MEDTR; Putative transcription factor TCP family
STRINGAES625901e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.27e-69TCP family protein